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PhyloString

Functional Relationships of Proteins Through Phylogenetic Clades

Description

PhyloString is a web server designed to identify, visualize and evaluate, the functional relationships between protein groups and phylogenetic clades using the values defined in the STRING database (Nucleic Acids Research, 2021 Jan 8;49(D1):D605-12).

grafcog

Help

Tutorial

Running PhyloString

Provide a search query seed:

click here to use an example sequence

It Doesn't look like a valid FASTA sequence

Establish the analysis parameter values:

Standard parameters

Phylogenetic level:

STRING cut-off:

COG centers:

Phylogenetic centers :

Custom analysis

Phylogenetic level:

STRING cut-off:

COG centers:

Phylogenetic centers :

Clustering method:

Distance metric:

No data found for
No COG founded for the input sequence, please try again.
Sequence provided is too short, must use a sequence of 40 or more residues.

3. See your results for : :

Heatmap for :


0

1000

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Statistics for your job with :

Download

COG and KOG definitions for your job with :

Download

Phylogenetic descriptions

Download

External resources for

PhyloString citation

PhyloString: a web server designed to identify, visualize, and evaluate functional relationships between orthologous protein groups across different phylogenetic lineages


Contact:
enrique.merino@ibt.unam.mx